Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs13220248 chr6:2395110 G/C 2.84E-9 521 40 40.58 12.07 KM Plot
KIRC rs13220395 chr6:26055368 A/G 1.06E-9 527 3.37 36.12 41.13 KM Plot
KIRC rs13220488 chr6:25896907 A/G 1.42E-9 519 41.27 36.87 2.38 KM Plot
KIRC rs1322188 chr6:165343216 A/G 3.58E-5 522 15.83 39.17 39.85 KM Plot
KIRC rs13234396 chr7:7742919 G/A 4.8E-5 527 38.1 48.63 5.47 KM Plot
KIRC rs13241780 chr7:156193575 C/T 4.85E-5 501 39.38 43.68 22.83 KM Plot
KIRC rs13247039 chr7:7760290 A/G 3.59E-5 522 39.38 42.33 5.47 KM Plot
KIRC rs13296663 chr9:6713143 G/A 6.72E-6 521 40.78 42.33 19.68 KM Plot
KIRC rs13315308 chr3:139780549 A/G 3.8E-6 519 40.28 33.97 3.67 KM Plot
KIRC rs13329084 chr15:44151063 A/G 1.48E-14 527 2.07 36.97 40.8 KM Plot
KIRC rs13355707 chr5:109993750 A/G 7.6E-6 527 35.03 29.43 40.8 KM Plot
KIRC rs1349131 chr2:2969422 C/G 8.92E-6 527 43.9 40 20.12 KM Plot
KIRC rs137927562 chr8:67261542 GAATA/G 0 524 39.38 40 0.6 KM Plot
KIRC rs138381095 chr11:36133204 G/A 1.49E-5 518 37.77 48.2 9.18 KM Plot
KIRC rs138742157 chr11:34759989 G/T 1.77E-7 517 39.53 39.17 3.3 KM Plot